Man pages for sjdlabgroup/MutSigTools
Mutational signature analysis
| addSignature | Add new signature(s) to an existing set of mutation... |
| caseControlSig | Identify signatures with significantly higher mutation burden... |
| clusterSignature | Hierarchical clustering of mutational signature. |
| confidenceSig | Provides interval of uncertainty for estimated weights of... |
| contextSNV | Partition mutations according to their genomic contexts |
| deleteSignature | Delete selected signatures from an existing set of mutation... |
| enrichSig | Identify enrichment for signatures in individual samples... |
| mergeSignature | Creates a new mutational signature by taking a linear... |
| persistSig | Mutation signatures in different allele frequency spectrum |
| processSNV | Estimate mutation frequency in tri-nucleotide motif contexts. |
| renameSignature | Rename selected signatures from an existing set of... |
| signatureHeatmap | Create a heatmap of motif weights for signatures. |
| signaturePCA | Create three PCA plots for signatures. |
| signature_tSNE | Create tSNE plot of signatures. |
| vcfToSNV | Convert vcf file to snv dataframe |
