hagelloch_sir: Measles in Hagelloch, Germany, 1861 (SIR format)

In skgallagher/EpiCompare: A Pipeline to Analyze and Compare Infectious Disease Epidemics

Description

This data is the SIR formulation of 188 cases of measles among children in the German city of Hagelloch, 1861, and is a reformulation of the data in hagelloch_raw. Each row is asssociated with 1 day (where t tells the number of days after the start of the outbreak), and the rest of the columns report the number of individuals suspectable, infected, and in recovery.

Usage

hagelloch_sir

Format

A data frame with 95 rows and 4 columns

t

time since outbreak, t = 0, …, T=94

S

Number of individuals suspectable

I

Number of individuals infected

R

Number of individuals in recovery

Details

Note that s_t + i_t + r_t = 188 for each row t in 0, …, 94.

Examples

## show first few cases
head(hagelloch_sir)
assertthat::assert_that(all(apply(hagelloch_sir[,-1], 1, sum) == 188))

skgallagher/EpiCompare documentation built on Sept. 14, 2021, 5:45 a.m.