generation_infection: Infect the current generation given the previous generation

In skgallagher/TBornotTB: Analyze Tuberculosis Patients in Maryland

Description

Infect the current generation given the previous generation

Usage

generation_infection(
  cluster_id,
  p_pos,
  p_neg,
  smear_pos_prob,
  gen,
  prev_gen,
  cluster_size,
  max_size
)

Arguments

cluster_id	unique cluster ID
p_pos	probability of being infected given a smear positive
p_neg	probability of being infected given a smear negative
smear_pos_prob	probability of being smear positive
gen	new generation number
prev_gen	data frame with at least smear status (0/1) and person_id
cluster_size	size of previous cluster
max_size	maximum size of cluster

Value

list with the following entries

new_cluster_size

new cluster size with the current generation

cur_gen

data frame of current generation (new infections)

n_inf

number of infections for each person in the previous generation

skgallagher/TBornotTB documentation built on April 21, 2020, 1:19 p.m.