simulate_cond_bp: Simulate a single branching process conditioned on the given...

In skgallagher/TBornotTB: Analyze Tuberculosis Patients in Maryland

Description

Simulate a single branching process conditioned on the given data

Usage

simulate_cond_bp(
  k,
  n,
  n_pos,
  part_list = NULL,
  one_init = FALSE,
  g_weight_list = NULL
)

Arguments

k	cluster ID
n	number of people in the cluster
n_pos	number of positive smears in the cluster
part_list	a list of unique partitions with
one_init	logical. If TRUE, we assume the tree grew from one person
g_weight_list	a summary of part_list, gives the number of times generations of size g appear in a cluster of size n

Value

data frame with the following columns

cluster_id

person_id

order of infection in the cluster

smear

-1 (negative) / + 1 (positive)

gen

generation number (>=0)

inf_id

ID of the infector

n_inf

number of people infected by person

cluster_pos

number of positive smears in the cluster

skgallagher/TBornotTB documentation built on April 21, 2020, 1:19 p.m.