API for skimlab/CCSBUtils
R Utilitiy Functions for CCSB
| Global functions | |
|---|---|
| classification_summary_workflow | Man page Source code |
| combine.predicted.list | Man page Source code |
| combine_batches | Man page Source code |
| combine_batches_dfs | Man page Source code |
| compute_difference | Man page Source code |
| compute_pca | Man page Source code |
| compute_tsne | Man page Source code |
| compute_umap | Man page Source code |
| construct_feature_heatmaps | Man page Source code |
| construct_feature_maps | Man page Source code |
| counts_to_cpm | Man page Source code |
| counts_to_tpm | Man page Source code |
| cv_loop_train | Man page Source code |
| cv_loop_train_iter | Man page Source code |
| cv_loop_train_parallel | Man page Source code |
| cv_train_final | Man page Source code |
| extract_metrics | Man page Source code |
| feature_boxplots | Man page Source code |
| filter_features | Man page Source code |
| filter_features_AUC | Man page Source code |
| flatten.predict.multiclass | Man page Source code |
| flatten.predict.multilayer | Man page Source code |
| get.subsamples | Man page Source code |
| get_selected_features | Man page Source code |
| ggplot_train_trajectory | Man page Source code |
| gtf_to_gene_length | Man page Source code |
| heatmap_features_cor | Man page Source code |
| heatmap_glmnet | Man page Source code |
| heatmap_prediction | Man page Source code |
| height.Heatmap | Source code |
| models_performance_summary | Man page Source code |
| mult_wilcox_test | Man page Source code |
| plot_projection | Man page Source code |
| predict.consensus | Man page Source code |
| predict.consensus.multiclass | Man page Source code |
| predict.consensus.subclass | Man page Source code |
| predict.consensus.type | Man page Source code |
| predict.multiClass | Man page Source code |
| predict.multilayer | Man page Source code |
| predict.type | Man page Source code |
| predict.type.multiclass | Man page Source code |
| predict.type.subclass | Man page Source code |
| prediction_consensus_summary | Man page Source code |
| prediction_summary | Man page Source code |
| prediction_tables | Man page Source code |
| quantize_robust_zscore | Man page Source code |
| read_gmt | Man page Source code |
| robust_zscore | Man page Source code |
| sample_stratified | Source code |
| save.PDF.Heatmap | Man page Source code |
| save.PNG.Heatmap | Source code |
| size.Heatmap | Man page Source code |
| split_se | Man page Source code |
| subset_metadata | Source code |
| train_cv_model_glmnet | Man page Source code |
| train_to_final_model | Man page Source code |
| width.Heatmap | Source code |
