combine_batches: Combine SummarizedExperiment objects and correct batch effect
In skimlab/CCSBUtils: R Utilitiy Functions for CCSB

combine_batches

R Documentation

Combine SummarizedExperiment objects and correct batch effect

Combine SummarizedExperiment objects and correct batch effect

combine_batches(
  se.list,
  ID = "ID",
  by.assay = "data",
  correct.batch = TRUE,
  ref.batch = NULL,
  visual.aid = FALSE,
  ...
)

`se.list`	a list of SummarizedExperiment objects
`ID`	a column name or index for gene ID
`by.assay`	assay
`ref.batch`	passed to `ComBat`
`visual.aid`	if TRUE, add UMAPs before and after batch correction

combined SummarizedExperiment object

skimlab/CCSBUtils documentation built on March 30, 2022, 4:52 a.m.

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