heatmap_glmnet: Create a heatmap of projected data (coef x data) with...

In skimlab/CCSBUtils: R Utilitiy Functions for CCSB

Create a heatmap of projected data (coef x data) with predicted outcomes at the top and consensus

Description

Create a heatmap of projected data (coef x data) with predicted outcomes at the top and consensus

Usage

heatmap_glmnet(se, assay = "data", cls_results, cv_model, scale = FALSE, ...)

Arguments

se	SummarizedExperiment container
assay	a name of assay slot in se
cls_results	An output of classification_summary_workflow
cv_model	output of caret::train or glmnet::cv_glmnet
scale	If TRUE, the data (=assays(se)[[assay]]) will be scaled
...	Additional parameters to be passed to Heatmap

Value

Heatmap object

skimlab/CCSBUtils documentation built on March 30, 2022, 4:52 a.m.