unpack_transcripts: unpack_transcripts

In skummerf/GenomicWidgets: interactive visualization of genomics data

Description

Method to load transcript annotation data to a format that is easy to make transcript visualizations from. The resulting object can be passed to make_track_plotter and will result in faster track function creation than passing the TxDb or OrganismDb object. Useful if calling make_track_plotter multiple times.

Usage

## S4 method for signature 'TxDb'
unpack_transcripts(object)

## S4 method for signature 'OrganismDb'
unpack_transcripts(object)

Arguments

object

a TxDb or OrganismDb object

Value

TranscriptParts object

Author(s)

Alicia Schep and Justin Finkle

Examples

library(TxDb.Hsapiens.UCSC.hg19.knownGene)
transc <- unpack_transcripts(TxDb.Hsapiens.UCSC.hg19.knownGene)
class(transc)

skummerf/GenomicWidgets documentation built on May 31, 2019, 6:16 p.m.