fetch_view_range: fetch_view_range
In skummerf/GenomicWidgets: interactive visualization of genomics data
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Function to get a range around a gene, using an OrganismDb or TxDb object
Usage
1
2
fetch_view_range(db_object, symbol, keytype = c("SYMBOL", "TXNAME"),
relative = c("TSS", "TTS", "full"), up = 1000, down = 1000)
Arguments
db_object
OrganismDb or TxDb object
symbol
name of gene
keytype
type of key
relative
get range relative to TSS, TTS, or full gene
up
basepairs upstream to include
down
basepairs downstream to include
Value
GenomicRanges
Author(s)
Alicia Schep and Justin Finkle
Examples
1
2
library(Homo.sapiens)
fetch_view_range(Homo.sapiens,"GLI2")
skummerf/GenomicWidgets documentation built on May 31, 2019, 6:16 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Function to get a range around a gene, using an OrganismDb or TxDb object
Usage
1 2 | fetch_view_range(db_object, symbol, keytype = c("SYMBOL", "TXNAME"),
relative = c("TSS", "TTS", "full"), up = 1000, down = 1000)
|
Arguments
db_object |
OrganismDb or TxDb object |
symbol |
name of gene |
keytype |
type of key |
relative |
get range relative to TSS, TTS, or full gene |
up |
basepairs upstream to include |
down |
basepairs downstream to include |
Value
GenomicRanges
Author(s)
Alicia Schep and Justin Finkle
Examples
1 2 | library(Homo.sapiens)
fetch_view_range(Homo.sapiens,"GLI2")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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