extract_peak_qtls: extracts QTL-like SNPs based on GWASpoly package

Description Usage Arguments

View source: R/RILStEp.R

Description

extracts QTL-like SNPs based on GWASpoly package

Usage

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extract_peak_qtls(
  data_for_gwas,
  phenotype_name,
  qtl_threshold_model,
  qtl_threshold_value,
  output,
  core_num
)

Arguments

data_for_gwas

phenotype and genotype data for GWASpoly from load_data

phenotype_name

trait's name

qtl_threshold_model

threshold method to select QTLs, "p_value" or "Bonferroni" or "FDR" or "permute"

qtl_threshold_value

threshold value to select QTLs depends on qtl_threshold_model (p-value or q-value)

output

prefix of output files

core_num

the number of CPU cores to use


slt666666/RILStEp documentation built on Feb. 23, 2022, 1:04 a.m.