rilstep: detect epistasis candidates based on bayes factor

In slt666666/RILStEp: What the Package Does (One Line, Title Case)

detect epistasis candidates based on bayes factor

Description

detect epistasis candidates based on bayes factor

Usage

rilstep(
  loaded_data,
  output,
  qtl_threshold_model = "FDR",
  qtl_threshold_value = 0.05,
  interval = 1,
  region = NA,
  qtls = NA,
  core_num = NA,
  heterozygous = FALSE
)

Arguments

loaded_data	phenotype and genotype dataset from load_data
output	prefix of output files
qtl_threshold_model	threshold method to select QTLs, "p_value" or "Bonferroni" or "FDR" or "permute"
qtl_threshold_value	threshold value to select QTLs depends on qtl_threshold_model (p-value or q-value)
interval	select 1 SNP in this interval number
region	specify SNP regions for detecting epistasis
qtls	specify QTL-like SNPs
core_num	specify the number of CPU core to use
heterozygous	consider heterozygous(TRUE) or not(FALSE)

slt666666/RILStEp documentation built on Dec. 19, 2024, 4:18 a.m.