accumulated_species: Accumulated species presence, cover, and height across...

In smccord/terradactyl: Tools for Creating and Using TerrADat

Accumulated species presence, cover, and height across Line-point intercept, Vegetation height, and Species inventory methods.

Description

Accumulated species presence, cover, and height across Line-point intercept, Vegetation height, and Species inventory methods.

Usage

accumulated_species(
  header,
  lpi_tall = NULL,
  height_tall = NULL,
  spp_inventory_tall = NULL,
  species_file = "",
  dead = TRUE,
  source = c("TerrADat", "AIM", "LMF", "NRI"),
  ...,
  generic_species_file = NULL
)

Arguments

header	File path to header rdata file
lpi_tall	File path to LPI rdata file
height_tall	File path to height rdata file
spp_inventory_tall	File path to species inventory rdata file
species_file	File path to species file if you want species attributes or updated species. Geodatabase or csv allowed.
...	Optional filtering expression to subset the number of plots

Examples

# Get a list of all species occurring on a plot across methods (LPI, height, species inventory)
# This method also adds cover and height by species. Be aware that sample sizes may be insufficient to make an accurate estimate
accumulated_species <- accumulated_species(lpi_tall = "~/AIM/Data/lpi_tall.rdata",
                                                      spp_inventory_tall = "~/AIM/Data/spp_inventory_tall.rdata",
                                                       height_tall = "~/AIM/Data/height_tall.rdata",
                                                       header = "~/AIM/Data/header.rdata",
                                                       species_file = "species_file.csv",
                                                       SpeciesState %in% "NM")

smccord/terradactyl documentation built on Sept. 12, 2024, 2:17 p.m.