gather_soil_horizon: Convert horizon data into a tall, tidy data frame

In smccord/terradactyl: Tools for Creating and Using TerrADat

Convert horizon data into a tall, tidy data frame

Description

Given wide format soil horizon data, create a tall format data frame usable by other terradactyl functions.

Usage

gather_soil_horizon_terradat(dsn = NULL, tblSoilPitHorizons = NULL)

gather_soil_horizon_lmf(dsn = NULL, SOILHORIZON = NULL)

gather_soil_horizon(
  dsn = NULL,
  source,
  SOILHORIZON = NULL,
  tblSoilPitHorizons = NULL,
  autoQC = TRUE
)

Arguments

dsn	Character string. The full filepath and filename (including file extension) of the geodatabase or text file containing the table of interest. This field is unnecessary if you provide either tblSoilPitHorizons (AIM/DIMA/TerrADat) or SOILHORIZON (LMF/NRI).
tblSoilPitHorizons	Dataframe of the data structure tblSoilPitHorizons from the DIMA database with the addition of PrimaryKey and DBKey fields. Use when data source is AIM, DIMA, or TerrADat; alternately provide dsn.
SOILHORIZON	Dataframe of the data structure SOILHORIZON from the LMF/NRI database with the addition of PrimaryKey and DBKey fields; alternately provide dsn.
source	Character string. The data source format, "AIM", "TerrADat", "DIMA", "LMF", "NRI" (case independent).

Value

A tall data frame containing soil horzon data.

See Also

Other <gather>: gather_all(), gather_gap(), gather_height(), gather_lpi(), gather_plot_characterization(), gather_rangeland_health(), gather_soil_stability(), gather_species_inventory()

Examples

gather_soil_horizon(dsn = "Path/To/AIM_Geodatabase.gdb",
                    source = "AIM")
gather_soil_horizon(dsn = "Path/To/LMF_Geodatabase.gdb",
                    source = "LMF")

aim_horizons <- read.csv("Path/To/tblSoilPitHorizons.csv")
gather_soil_horizon(source = "AIM",
                    tblSoilPitHorizons = aim_horizons)

lmf_horizons <- read.csv("Path/To/SOILHORIZON.csv")
gather_soil_horizon(source = "LMF",
                    SOILHORIZON = lmf_horizons)

smccord/terradactyl documentation built on Sept. 12, 2024, 2:17 p.m.