defunct: Defunct Functions in Package 'GWASTools'

GWASTools-defunctR Documentation

Defunct Functions in Package ‘GWASTools’

Description

These functions are defunct and no longer available.

Details

The following functions are defunct; use the replacement indicated below:

  • pedigreeClean: pedigreeCheck

  • pedigreeFindDuplicates: pedigreeCheck

  • ncdfCreate: createDataFile

  • ncdfAddData: createDataFile

  • ncdfAddIntensity: createAffyIntensityFile

  • ncdfCheckGenotype: checkGenotypeFile

  • ncdfCheckIntensity: checkIntensityFile

  • ncdfSetMissingGenotypes: setMissingGenotypes

  • gdsSetMissingGenotypes: setMissingGenotypes

  • ncdfImputedDosage: imputedDosageFile

  • gdsImputedDosage: imputedDosageFile

  • gdsCheckImputedDosage: checkImputedDosageFile

  • assocTestRegression: assocRegression

  • assocTestCPH: assocCoxPH

  • assocTestFisherExact: batchFisherTest

  • gwasExactHW: exactHWE

  • ncdfSubset: gdsSubset

  • ncdfSubsetCheck: gdsSubsetCheck

  • plinkToNcdf: snpgdsBED2GDS

  • convertVcfGds: snpgdsVCF2GDS


smgogarten/GWASTools documentation built on May 18, 2024, 1:19 a.m.