RunEnrichrRegulons: RunEnrichrRegulons

In smorabit/hdWGCNA: hdWGCNA

RunEnrichrRegulons

Description

Run Enrichr gene set enrichment tests on hdWGCNA modules

Usage

RunEnrichrRegulons(
  seurat_obj,
  dbs = c("GO_Biological_Process_2021", "GO_Cellular_Component_2021",
    "GO_Molecular_Function_2021"),
  depth = 1,
  use_regulons = TRUE,
  min_genes = 5,
  wait = TRUE,
  wait_time = 5,
  wgcna_name = NULL,
  ...
)

Arguments

seurat_obj	A Seurat object
dbs	character vector of EnrichR databases
wait	logical indicating whether or not to wait some time between sending requests to the EnrichR server.
wait_time	the number of seconds to wait between sending requests to the EnrichR server. Value must be less than 60.
wgcna_name	The name of the hdWGCNA experiment in the seurat_obj@misc slot
max_genes	Max number of genes to include per module, ranked by kME.

smorabit/hdWGCNA documentation built on Oct. 23, 2024, 11:19 p.m.