R/uniprotSubcell.R

In soderling-lab/geneLists: tools for mapping gene identifiers and a collection of gene lists in a universal format

#' Apical cell membrane|Basal cell membrane|Basolateral cell membrane|Cell junction|Cell junction, adherens junction|Cell junction, desmosome|Cell junction, focal adhesion|Cell junction, gap junction|Cell junction, hemidesmosome|Cell junction, paranodal septate junction|Cell junction, synapse|Cell junction, synapse, postsynapse|Cell junction, synapse, postsynaptic cell membrane|Cell junction, synapse, postsynaptic density|Cell junction, synapse, postsynaptic density membrane|Cell junction, synapse, presynapse|Cell junction, synapse, presynaptic active zone|Cell junction, synapse, presynaptic cell membrane|Cell junction, synapse, synaptic cell membrane|Cell junction, synapse, synaptosome|Cell junction, tight junction|Cell membrane|Cell membrane, sarcolemma|Cell membrane, sarcolemma, T-tubule|Cell projection|Cell projection, axon|Cell projection, cilium|Cell projection, cilium membrane|Cell projection, cilium, flagellum|Cell projection, cilium, flagellum membrane|Cell projection, cilium, photoreceptor outer segment|Cell projection, dendrite|Cell projection, dendritic spine|Cell projection, dendritic spine membrane|Cell projection, filopodium|Cell projection, filopodium membrane|Cell projection, filopodium tip|Cell projection, growth cone|Cell projection, growth cone membrane|Cell projection, invadopodium|Cell projection, invadopodium membrane|Cell projection, kinocilium|Cell projection, lamellipodium|Cell projection, lamellipodium membrane|Cell projection, microvillus|Cell projection, microvillus membrane|Cell projection, neuron projection|Cell projection, phagocytic cup|Cell projection, podosome|Cell projection, pseudopodium|Cell projection, ruffle|Cell projection, ruffle membrane|Cell projection, stereocilium|Cell projection, stereocilium membrane|Cell surface|Chromosome|Chromosome, centromere|Chromosome, centromere, kinetochore|Chromosome, telomere|Cleavage furrow|Cytoplasm|Cytoplasm, cell cortex|Cytoplasm, Cytoplasmic ribonucleoprotein granule|Cytoplasm, cytoskeleton|Cytoplasm, cytoskeleton, cilium axoneme|Cytoplasm, cytoskeleton, cilium basal body|Cytoplasm, cytoskeleton, flagellum axoneme|Cytoplasm, cytoskeleton, microtubule organizing center|Cytoplasm, cytoskeleton, microtubule organizing center, centrosome|Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriolar satellite|Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriole|Cytoplasm, cytoskeleton, spindle|Cytoplasm, cytoskeleton, spindle pole|Cytoplasm, cytoskeleton, stress fiber|Cytoplasm, cytosol|Cytoplasm, myofibril|Cytoplasm, myofibril, sarcomere|Cytoplasm, myofibril, sarcomere, I band|Cytoplasm, myofibril, sarcomere, M line|Cytoplasm, myofibril, sarcomere, Z line|Cytoplasm, P-body|Cytoplasm, perinuclear region|Cytoplasm, Stress granule|Cytoplasmic granule|Cytoplasmic granule membrane|Cytoplasmic side|Cytoplasmic vesicle|Cytoplasmic vesicle lumen|Cytoplasmic vesicle membrane|Cytoplasmic vesicle, autophagosome|Cytoplasmic vesicle, autophagosome membrane|Cytoplasmic vesicle, clathrin-coated vesicle|Cytoplasmic vesicle, clathrin-coated vesicle membrane|Cytoplasmic vesicle, COPI-coated vesicle membrane|Cytoplasmic vesicle, COPII-coated vesicle membrane|Cytoplasmic vesicle, phagosome|Cytoplasmic vesicle, phagosome membrane|Cytoplasmic vesicle, secretory vesicle|Cytoplasmic vesicle, secretory vesicle lumen|Cytoplasmic vesicle, secretory vesicle membrane|Cytoplasmic vesicle, secretory vesicle, acrosome|Cytoplasmic vesicle, secretory vesicle, acrosome inner membrane|Cytoplasmic vesicle, secretory vesicle, acrosome membrane|Cytoplasmic vesicle, secretory vesicle, acrosome outer membrane|Cytoplasmic vesicle, secretory vesicle, chromaffin granule membrane|Cytoplasmic vesicle, secretory vesicle, neuronal dense core vesicle|Cytoplasmic vesicle, secretory vesicle, synaptic vesicle|Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane|Early endosome|Early endosome membrane|Endomembrane system|Endoplasmic reticulum|Endoplasmic reticulum lumen|Endoplasmic reticulum membrane|Endoplasmic reticulum-Golgi intermediate compartment|Endoplasmic reticulum-Golgi intermediate compartment membrane|Endosome|Endosome lumen|Endosome membrane|Endosome, multivesicular body|Endosome, multivesicular body membrane|Extracellular side|Golgi apparatus|Golgi apparatus lumen|Golgi apparatus membrane|Golgi apparatus, cis-Golgi network|Golgi apparatus, cis-Golgi network membrane|Golgi apparatus, Golgi stack|Golgi apparatus, Golgi stack membrane|Golgi apparatus, trans-Golgi network|Golgi apparatus, trans-Golgi network membrane|Inflammasome|Intermembrane side|it results in protein translocation from the cytoplasm into the ERGIC (endoplasmic reticulum-Golgi intermediate compartment) followed by vesicle entry and secretion|Late endosome|Late endosome membrane|Lateral cell membrane|Lipid droplet|Lipid-anchor|Lipid-anchor, GPI-anchor|Lumenal side|Lysosome|Lysosome lumen|Lysosome membrane|Matrix side|Melanosome|Melanosome membrane|Membrane|Membrane raft|Membrane, caveola|Membrane, clathrin-coated pit|Membrane, coated pit|Microsome|Microsome membrane|Midbody|Midbody, Midbody ring|Mitochondrion|Mitochondrion inner membrane|Mitochondrion intermembrane space|Mitochondrion matrix|Mitochondrion matrix, mitochondrion nucleoid|Mitochondrion membrane|Mitochondrion outer membrane|Multi-pass membrane protein|Myelin membrane|Nucleoplasmic side|Nucleus|Nucleus envelope|Nucleus inner membrane|Nucleus matrix|Nucleus membrane|Nucleus outer membrane|Nucleus speckle|Nucleus, Cajal body|Nucleus, gem|Nucleus, nuclear pore complex|Nucleus, nucleolus|Nucleus, nucleoplasm|Nucleus, PML body|Perikaryon|Peripheral membrane protein|Peroxisome|Peroxisome matrix|Peroxisome membrane|Photoreceptor inner segment|Photoreceptor outer segment membrane|Postsynaptic Golgi apparatus|Preautophagosomal structure|Preautophagosomal structure membrane|Recycling endosome|Recycling endosome membrane|Rough endoplasmic reticulum|Rough endoplasmic reticulum membrane|Sarcoplasmic reticulum|Sarcoplasmic reticulum lumen|Sarcoplasmic reticulum membrane|Secreted|Secreted, extracellular exosome|Secreted, extracellular space|Secreted, extracellular space, extracellular matrix|Secreted, extracellular space, extracellular matrix, basement membrane|Secreted, extracellular space, extracellular matrix, interphotoreceptor matrix|Single-pass membrane protein|Single-pass type I membrane protein|Single-pass type II membrane protein|Single-pass type III membrane protein|Single-pass type IV membrane protein|Vacuole membrane|Vesicle
#'
#' @docType data
#'
#' @usage data()
#'
#' @format An object of class \code{"list"};
#'
#' @keywords datasets
#'
#' @references none
#'
#' @source \href{source}{uniprot.org}
#'
#' @examples
#' data()
"uniprotSubcell"