Files in sofpn/rprimer
Design Degenerate Oligos from a Multiple DNA Sequence Alignment
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/AllClasses.R
R/checkMatch.R
R/consensusProfile.R
R/datasets.R
R/designAssays.R
R/designOligos.R
R/plotData.R
R/rprimer-package.R
R/runRprimerApp.R
R/shiny-app.R
R/shiny-helpers.R
R/shiny-module-assay.R
R/shiny-module-assay_filter.R
R/shiny-module-consensus.R
R/shiny-module-data.R
R/shiny-module-oligo.R
R/shiny-module-oligo_filter.R
R/shiny-module-welcome.R
R/sysdata.rda
R/tm.R
README.Rmd
README.md
codecov.yml
data-raw/code-to-generate-example-data.R
data-raw/lookup-tables.R
data/exampleRprimerAlignment.RData
data/exampleRprimerAssay.RData
data/exampleRprimerMatchAssay.RData
data/exampleRprimerMatchOligo.RData
data/exampleRprimerOligo.RData
data/exampleRprimerProfile.RData
inst/CITATION
inst/extdata/example_alignment.txt
inst/script/accession_valid_sequences.txt
inst/script/documentation_example_alignment.txt
inst/script/script_to_identify_valid_genomes.R
inst/script/typing_results.txt
man/Rprimer-classes.Rd
man/checkMatch.Rd
man/consensusProfile.Rd
man/designAssays.Rd
man/designOligos.Rd
man/example-datasets.Rd
man/figures/README-unnamed-chunk-10-1.png
man/figures/README-unnamed-chunk-11-1.png
man/figures/README-unnamed-chunk-11-2.png
man/figures/README-unnamed-chunk-12-1.png
man/figures/README-unnamed-chunk-13-1.png
man/figures/README-unnamed-chunk-14-1.png
man/figures/README-unnamed-chunk-15-1.png
man/figures/README-unnamed-chunk-16-1.png
man/figures/README-unnamed-chunk-17-1.png
man/figures/README-unnamed-chunk-18-1.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-7-1.png
man/figures/README-unnamed-chunk-8-1.png
man/figures/README-unnamed-chunk-9-1.png
man/figures/rprimer.png
man/plotData.Rd
man/rprimer-package.Rd
man/runRprimerApp.Rd
tests/testthat.R
tests/testthat/test-AllClasses.R
tests/testthat/test-checkMatch.R
tests/testthat/test-consensusProfile.R
tests/testthat/test-designAssays.R
tests/testthat/test-designOligos.R
tests/testthat/test-plotData.R
tests/testthat/test-tm.R
tests/testthat/test-workflow.R
vignettes/bibliography.bibtex
vignettes/biomed-central.csl
vignettes/getting-started-with-rprimer.Rmd
