JAGSTcomp: JAGST competitive test

Description Usage Arguments Examples

View source: R/jagst.R

Description

JAGST competitive test

Usage

1
JAGSTcomp(array, design, inds, its = 200, num_nest = 2000)

Arguments

array

expression array. Genes along rows.

design

design matrix (intercept included by default)

inds

indices of transcripts to be tested

its

number of iterations for null generation. This number times num_nest is the total number of samples for the null.

num_nest

number of samples within each null iteration. Cheap computationally, but decreasing returns efficiency gain.

Examples

1
2
3
4
arr <- matrix(rnorm(100*100),nrow=100,ncol=100)
des <- rep(0:1,each=50)
ind <- sample(100,10)
JAGSTcomp(arr,des,ind)

sojourningNorth/JAGST documentation built on May 22, 2019, 4:42 p.m.