roastMix: ROAST undirected/mixed test

Description Usage Arguments Examples

View source: R/jagst.R

Description

ROAST undirected/mixed test

Usage

1
roastMix(array, design, inds, samp_size = 2000)

Arguments

array

expression array. Genes along rows.

design

design matrix (intercept included by default)

inds

indices of transcripts to be tested

samp_size

number of samples off of which empirical p-value is calculated (not permutation based, but sampling from parametric distribution)

Examples

1
2
3
4
arr <- matrix(rnorm(100*100),nrow=100,ncol=100)
des <- rep(0:1,each=50)
ind <- sample(100,10)
roastMix(arr,des,ind)

sojourningNorth/JAGST documentation built on May 22, 2019, 4:42 p.m.