| aris | aris example |
| best_iter | best_iter |
| correct | correct |
| cs | cs example |
| data_prepare | data_prepare |
| diss | diss example |
| find_markers | find_markers |
| learn_distance | learn_distance |
| lineage | lineage |
| lineage_tree | lineage_tree |
| main | main |
| multi_best_iter | multi_best_iter |
| pcluster | pcluster example |
| scc | scc example |
| score | score example |
| sum_score | sum_score |
| TF1_clones | LINEAGE example and test dataset |
| top_sites | top_sites |
| traceplot | traceplot |
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