lineage_tree: lineage_tree

In songjiajia2018/LINEAGE: Label-Free Identification of Endogenous Informative Single Cell Mitochondrial RNA Mutation for Lineage Analysis and Clonal Evolution

lineage_tree

Description

Using the result of best_iter or multi_best_iter as input, lineage_tree will export lineage tree of the lineage analysis result.

Usage

lineage_tree(result)

Arguments

result

The result of best_iter or multi_best_iter. Required.

Details

trace the lineage tree of the lineage analysis result

Value

An object of class hclust which describes the lineage tree produced by LINEAGE.

Examples

data("TF1_clones")
data=TF1_clones$data
## performs a non-parallel iteration process 
result=lineage(data, repeats=30, thread=NULL)
## performs a parallel iteration process
# result=lineage(data, repeats=30, thread=10)
hc= lineage_tree(result)

songjiajia2018/LINEAGE documentation built on Oct. 17, 2022, 6:17 a.m.