correct: correct

In songjiajia2018/LINEAGE: Label-Free Identification of Endogenous Informative Single Cell Mitochondrial RNA Mutation for Lineage Analysis and Clonal Evolution

correct

Description

Using mitochondrial variants frequency matrix as input, transform the zeroes into ones when the median of the non-zero frequencies in the same row >= 0.6.

Usage

correct(x)

Arguments

x	A dataframe containing mitochondrial variants frequency matrix where a column represented a single cell and a row represented variants frequency of a specific mitochondrial genotype. Required.

Details

Mitochondrial genotype matrix modification

Value

A dataframe containing a modified mitochondrial genotype matrix.

Examples

data("TF1_clones")
data=TF1_clones$data
d=data_prepare(data)
d2=data.frame()
for(i in 1:12){
    di=d[[i]]
    di2=as.data.frame(t(apply(di,1,correct)))
    d2=rbind(d2,di2)
}

songjiajia2018/LINEAGE documentation built on Oct. 17, 2022, 6:17 a.m.