traceplot: traceplot

In songjiajia2018/LINEAGE: Label-Free Identification of Endogenous Informative Single Cell Mitochondrial RNA Mutation for Lineage Analysis and Clonal Evolution

traceplot

Description

Using the result of best_iter or multi_best_iter as input, traceplot will export a heatmap and a suggested 2D visualization plot for the lineage analysis result.

Usage

traceplot(result, label)

Arguments

result	The result of best_iter or multi_best_iter. Required.
label	A dataframe containing lineage label with at least 2 columns named "Sample" and "Label". "Sample" column contains sample ids; "label" column is the lineage label of each sample. Required.

Details

Visualization of the result

Value

A list containing a heatmap and a 2D visualization plot for the result of LINEAGE.

Examples

data("TF1_clones")
data=TF1_clones$data
rlabel=TF1_clones$rlabel
## performs a non-parallel iteration process 
result=lineage(data, repeats=30, thread=NULL)
## performs a parallel iteration process
# result=lineage(data, repeats=30, thread=10)
## plots with inferred clone labels
plots=traceplot(result = result, label= result$label)
## plots with reference clone labels
plots=traceplot(result = result, label= rlabel)

songjiajia2018/LINEAGE documentation built on Oct. 17, 2022, 6:17 a.m.