Man pages for sophia-lambert/UDivEvo
A package for Unknown Diversity Diversification Analysis in Evolution
| crown_age | Calculate the crown age of a phylogeny |
| fitMCMC_bdK | Bayesian fit of the birth-death k model on a phylogeny |
| fitMCMC_bdRho | Bayesian fit of the birth-death rho model on a phylogeny or a... |
| fitMLE_bdK | Maximum likelihood fit of the birth-death k model on a... |
| fitMLE_bdRho | Maximum likelihood fit of the birth-death rho model on a... |
| int_Rho | Integrate function |
| likelihood_bdK | Likelihood birth-death k function |
| likelihood_bdRho | Likelihood birth-death rho function |
| P1_a | Probabillity that all speciation and extinction events... |
| Pa | Probabillity that all speciation and extinction events... |
| Pcond | Conditioning the birth-death process on a certain time and... |
| Pcond_reparam | Conditioning the birth-death process on a certain time and... |
| phi | Prior distribution on sampling probabilitie(s) |
| Pnd | Probability density of node depths. |
| Pnd_reparam | Probability density of node depths reparametrised. |
| stem_age | Calculate the stem age of a phylogeny |
