Pcond_reparam: Conditioning the birth-death process on a certain time and...
In sophia-lambert/UDivEvo: A package for Unknown Diversity Diversification Analysis in Evolution
View source: R/Pcond_reparam.R
Pcond_reparam R Documentation
Conditioning the birth-death process on a certain time and the survival of the process reparametrised.
Description
Calculating the probability of conditioning the birth-death process on the time t and its survival to present day parametrised on y*λ and r.
Usage
Pcond_reparam(t, yl, r)
Arguments
t
Numeric. The specific time in the past in millions of years. Typically, the age of the clade is used to condition on the start of the process.
yl
Numeric. The sampling probability times the speciation rate: y*λ.
r
Numeric. The net diversification rate: λ - μ. The units are in events/lineages/millions years.
Value
The probability of the birth-death process starting with one lineage at time t and surviving at present parametrised on y*λ and r.
Author(s)
Sophia Lambert
See Also
likelihood_bdRho, fitMCMC_bdRho
sophia-lambert/UDivEvo documentation built on Sept. 27, 2022, 11:05 p.m.
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View source: R/Pcond_reparam.R
| Pcond_reparam | R Documentation |
Conditioning the birth-death process on a certain time and the survival of the process reparametrised.
Description
Calculating the probability of conditioning the birth-death process on the time t and its survival to present day parametrised on y*λ and r.
Usage
Pcond_reparam(t, yl, r)
Arguments
t |
Numeric. The specific time in the past in millions of years. Typically, the age of the clade is used to condition on the start of the process. |
yl |
Numeric. The sampling probability times the speciation rate: y*λ. |
r |
Numeric. The net diversification rate: λ - μ. The units are in events/lineages/millions years. |
Value
The probability of the birth-death process starting with one lineage at time t and surviving at present parametrised on y*λ and r.
Author(s)
Sophia Lambert
See Also
likelihood_bdRho, fitMCMC_bdRho
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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