Pcond: Conditioning the birth-death process on a certain time and...
In sophia-lambert/UDivEvo: A package for Unknown Diversity Diversification Analysis in Evolution
Pcond R Documentation
Conditioning the birth-death process on a certain time and the survival of the process.
Description
Calculating the probability of conditioning the birth-death process on the time t and its survival to present day.
Usage
Pcond(t, r, epsi, y)
Arguments
t
Numeric. The specific time in the past in millions of years. Typically, the age of the clade is used to condition on the start of the process.
r
Numeric. The net diversification rate: λ - μ. The units are in events/lineages/millions years.
epsi
Numeric. The turnover rate: μ / λ. The units are in events/lineages/millions years.
y
Numeric. The sampling probability also called sampling fraction: k / N.
Value
The probability of the birth-death process starting with one lineage at time t and surviving at present.
Author(s)
Sophia Lambert
See Also
likelihood_bdRho, fitMCMC_bdRho
sophia-lambert/UDivEvo documentation built on Sept. 27, 2022, 11:05 p.m.
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| Pcond | R Documentation |
Conditioning the birth-death process on a certain time and the survival of the process.
Description
Calculating the probability of conditioning the birth-death process on the time t and its survival to present day.
Usage
Pcond(t, r, epsi, y)
Arguments
t |
Numeric. The specific time in the past in millions of years. Typically, the age of the clade is used to condition on the start of the process. |
r |
Numeric. The net diversification rate: λ - μ. The units are in events/lineages/millions years. |
epsi |
Numeric. The turnover rate: μ / λ. The units are in events/lineages/millions years. |
y |
Numeric. The sampling probability also called sampling fraction: k / N. |
Value
The probability of the birth-death process starting with one lineage at time t and surviving at present.
Author(s)
Sophia Lambert
See Also
likelihood_bdRho, fitMCMC_bdRho
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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