Man pages for spo111/DynaMO
DynaMO predicts spatiotemporal binding of transcription factors
| clsnumcount | Calculate the number of clusters for K-means clustering |
| countmotifsegreads | Calculate numbers of reads overlapping motif sites |
| DynaMO | Predicts spatiotemporal binding activities of transcription... |
| DynaMOs | Predicts binding sites of transcription factors |
| fitfunc | Fit a curve of a dynamic pattern |
| get.motif | Read motif sites |
| get.motifbin | Divide motif sites into bins |
| get.reads | Import aligned reads |
| innerprocal | Calculate inner products of motif sites |
| motifbincount | Count reads overlapping consecutive bins at motif sites |
| motifbinRFfdr | Calculate the false discovery rates of motif sites |
| motifclstest | Find motifs enriched in clustering |
| motifRFid | Find motif sites for training random forest models |
