get.motifbin: Divide motif sites into bins

In spo111/DynaMO: DynaMO predicts spatiotemporal binding of transcription factors

Description

Import motif sites and divide each site into consecutive bins.

Usage

get.motifbin(motifseg, bin = 50)

Arguments

motifseg	The name of a GRanges object storing motif sites. Motif sites are extended, and usually from the output of get.motif function.
bin	The length of each bin. Default is 50 bp.

Details

The function imports a list of motif sites stored in a GRanges object and divides each motif site into consecutive small bins and outputs another GRanges object.

Value

A GRanges object.

Author(s)

Zheng Kuang

Examples

readfile<-system.file("extdata","motif_1.txt",package="DynaMO",mustWork=TRUE)
motif1<-get.motif(readfile,300)
motifbin1<-get.motifbin(motif1,20)

spo111/DynaMO documentation built on May 30, 2019, 7:59 a.m.