flow_CompPlot: Visually Inspect Compensation Samples

In ssmpsn2/flowAssist: User friendly manipulation and analysis of flow cytometry data

Description

A function for building flowJo V10-like plots that allow for visual inspection of the quality of acquired compensation matrices

Usage

flow_CompPlot(compList, parameter, compMatrix)

Arguments

compList	A list of flowFrames containing compensation control data. Samples may need pre-processing (to remove doublets, outliers) to generate nice-looking plots.
parameter	Optional character string defining a single compensation sample (e.g., PE control) to build a plot for. If not provided, defaults to building plots for all items in compList.
compMatrix	Optional data frame containing compensation values. By default, the compensation matrix which is applied to compList should be the matrix that was built during acquisition to compensate the actual experimental samples. This can be easily obtained by calling the get_CompMatrix() function on a flowFrame containing experimental data, but only if the flowFrame has never been converted to a data frame, as this drops all experimental metadata associated with the flowFrame class.

ssmpsn2/flowAssist documentation built on May 30, 2019, 7:12 p.m.