get_CompMatrix: Retrive Compensation Matrix
In ssmpsn2/flowAssist: User friendly manipulation and analysis of flow cytometry data
Description
Usage
Arguments
Value
Description
Reads the metadata of a flowFrame object and returns the compensation matrix which was applied to it.
The structure of the returned data frame: Column labels denote fluorescence channel, while
row labels denote spillover from other fluorophores detected in that channel.
The returned compensation matrix can be edited and reapplied to any flowFrame using the flowCore function
compensate(flowFrame, compensationMatrix), as long as the fluorophore labels match.
Usage
1
get_CompMatrix(flowFrame)
Arguments
flowFrame
An object of the flowFrame class which possesses compensation metadata.
Value
A data frame of compensation values.
ssmpsn2/flowAssist documentation built on May 30, 2019, 7:12 p.m.
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Description Usage Arguments Value
Description
Reads the metadata of a flowFrame object and returns the compensation matrix which was applied to it. The structure of the returned data frame: Column labels denote fluorescence channel, while row labels denote spillover from other fluorophores detected in that channel. The returned compensation matrix can be edited and reapplied to any flowFrame using the flowCore function compensate(flowFrame, compensationMatrix), as long as the fluorophore labels match.
Usage
1 | get_CompMatrix(flowFrame)
|
Arguments
flowFrame |
An object of the flowFrame class which possesses compensation metadata. |
Value
A data frame of compensation values.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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