Files in stan-dev/rstanarm

Bayesian Applied Regression Modeling via Stan

.Rbuildignore

.github/.gitignore

.github/FUNDING.yml

.github/ISSUE_TEMPLATE.md

.github/workflows/R-CMD-check.yaml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/as.matrix.stanreg.R R/bayes_R2.R R/data_block.R R/doc-QR.R R/doc-adapt_delta.R R/doc-algorithms.R R/doc-datasets.R R/doc-example_jm.R R/doc-example_model.R R/doc-modeling-functions.R R/doc-rstanarm-deprecated.R R/doc-rstanarm-package.R R/draws.R R/jm_data_block.R R/jm_make_assoc_parts.R R/jm_make_assoc_terms.R R/launch_shinystan.R R/log_lik.R R/loo-kfold.R R/loo-prediction.R R/loo.R R/misc.R R/neg_binomial_2.R R/plots.R R/posterior_interval.R R/posterior_linpred.R R/posterior_predict.R R/posterior_survfit.R R/posterior_traj.R R/posterior_vs_prior.R R/pp_check.R R/pp_data.R R/pp_validate.R R/predict.R R/predictive_error.R R/predictive_interval.R R/print-and-summary.R R/prior_summary.R R/priors.R R/ps_check.R R/simulate_b_pars.R R/stan_aov.R R/stan_betareg.R R/stan_betareg.fit.R R/stan_biglm.R R/stan_biglm.fit.R R/stan_clogit.R R/stan_gamm4.R R/stan_glm.R R/stan_glm.fit.R R/stan_glmer.R R/stan_jm.R R/stan_jm.fit.R R/stan_lm.R R/stan_lm.fit.R R/stan_mvmer.R R/stan_nlmer.R R/stan_polr.R R/stan_polr.fit.R R/stanmodels.R R/stanmvreg-methods.R R/stanmvreg.R R/stanreg-methods.R R/stanreg-objects.R R/stanreg.R R/stanreg_list.R R/zzz.R README.md

cleanup

cleanup.win

configure.ac

data/bball1970.rda

data/bball2006.rda

data/kidiq.rda

data/mortality.rda

data/pbcLong.rda

data/pbcSurv.rda

data/radon.rda

data/roaches.rda

data/tumors.rda

data/wells.rda

demo/00Index

demo/ARM_Ch03.R demo/ARM_Ch04.R demo/ARM_Ch05.R demo/ARM_Ch07.R demo/ARM_Ch08.R demo/ARM_Ch09.R demo/ARM_Ch12_13.R demo/ARM_Ch14.R demo/CLEANUP.R demo/SETUP.R

dev-notes/frost.css

dev-notes/rstanarm_dev_notes.html

dev-notes/rstanarm_dev_notes.md

inst/CITATION

inst/include/CODOLS.hpp

inst/include/meta_header.hpp

inst/include/tests.cpp

man-roxygen/args-QR.R man-roxygen/args-adapt_delta.R man-roxygen/args-algorithm.R man-roxygen/args-ci-geom-args.R man-roxygen/args-dots-ignored.R man-roxygen/args-dots.R man-roxygen/args-formula-data-subset.R man-roxygen/args-ids.R man-roxygen/args-labs.R man-roxygen/args-m.R man-roxygen/args-max_treedepth.R man-roxygen/args-pars.R man-roxygen/args-prior_PD.R man-roxygen/args-prior_aux.R man-roxygen/args-prior_covariance.R man-roxygen/args-prior_intercept.R man-roxygen/args-prior_smooth.R man-roxygen/args-priors.R man-roxygen/args-regex-pars.R man-roxygen/args-remove-stub.R man-roxygen/args-same-as-2.R man-roxygen/args-same-as-rarely-2.R man-roxygen/args-same-as-rarely.R man-roxygen/args-same-as.R man-roxygen/args-scales.R man-roxygen/args-sparse.R man-roxygen/args-stanjm-object.R man-roxygen/args-stanmvreg-object.R man-roxygen/args-stanreg-object.R man-roxygen/args-x-y.R man-roxygen/reference-bayesvis.R man-roxygen/reference-bda.R man-roxygen/reference-gelman-carlin.R man-roxygen/reference-gelman-hill.R man-roxygen/reference-lme4.R man-roxygen/reference-loo.R man-roxygen/reference-morey.R man-roxygen/reference-muth.R man-roxygen/reference-piironen-vehtari.R man-roxygen/reference-stan-manual.R man-roxygen/return-stanfit-object.R man-roxygen/return-stanreg-object.R man-roxygen/see-also.R

man/figures/logo.svg

man/figures/stanlogo.png

rstanarm.Rproj

src/Makevars

src/Makevars.win

src/init.cpp

src/rstanarm-win.def

src/stan_files/bernoulli.stan

src/stan_files/binomial.stan

src/stan_files/continuous.stan

src/stan_files/count.stan

src/stan_files/data/NKX.stan

src/stan_files/data/data_assoc.stan

src/stan_files/data/data_betareg.stan

src/stan_files/data/data_event.stan

src/stan_files/data/data_glm.stan

src/stan_files/data/data_mvmer.stan

src/stan_files/data/dimensions_mvmer.stan

src/stan_files/data/glmer_stuff.stan

src/stan_files/data/glmer_stuff2.stan

src/stan_files/data/hyperparameters.stan

src/stan_files/data/hyperparameters_assoc.stan

src/stan_files/data/hyperparameters_event.stan

src/stan_files/data/hyperparameters_mvmer.stan

src/stan_files/data/weights_offset.stan

src/stan_files/functions/SSfunctions.stan

src/stan_files/functions/bernoulli_likelihoods.stan

src/stan_files/functions/binomial_likelihoods.stan

src/stan_files/functions/common_functions.stan

src/stan_files/functions/continuous_likelihoods.stan

src/stan_files/functions/count_likelihoods.stan

src/stan_files/functions/jm_functions.stan

src/stan_files/functions/mvmer_functions.stan

src/stan_files/gqs/gen_quantities_mvmer.stan

src/stan_files/jm.stan

src/stan_files/lm.stan

src/stan_files/model/assoc_evaluate.stan

src/stan_files/model/eta_add_Zb.stan

src/stan_files/model/eta_no_intercept.stan

src/stan_files/model/eta_z_no_intercept.stan

src/stan_files/model/event_lp.stan

src/stan_files/model/make_eta.stan

src/stan_files/model/make_eta_bern.stan

src/stan_files/model/make_eta_tmp.stan

src/stan_files/model/make_eta_tmp2.stan

src/stan_files/model/make_eta_z.stan

src/stan_files/model/mvmer_lp.stan

src/stan_files/model/priors_betareg.stan

src/stan_files/model/priors_glm.stan

src/stan_files/model/priors_mvmer.stan

src/stan_files/mvmer.stan

src/stan_files/parameters/parameters_assoc.stan

src/stan_files/parameters/parameters_betareg.stan

src/stan_files/parameters/parameters_event.stan

src/stan_files/parameters/parameters_glm.stan

src/stan_files/parameters/parameters_mvmer.stan

src/stan_files/polr.stan

src/stan_files/pre/Brilleman_copyright.stan

src/stan_files/pre/Columbia_copyright.stan

src/stan_files/pre/license.stan

src/stan_files/tdata/tdata_betareg.stan

src/stan_files/tdata/tdata_glm.stan

src/stan_files/tdata/tdata_mvmer.stan

src/stan_files/tparameters/tparameters_betareg.stan

src/stan_files/tparameters/tparameters_glm.stan

src/stan_files/tparameters/tparameters_mvmer.stan

tests/testthat.R tests/testthat/Rplots.pdf tests/testthat/helper.R

tests/testthat/include

tests/testthat/stan_files

tests/testthat/test_loo.R tests/testthat/test_methods.R tests/testthat/test_misc.R tests/testthat/test_plots.R tests/testthat/test_posterior_predict.R tests/testthat/test_pp_check.R tests/testthat/test_pp_validate.R tests/testthat/test_predict.R tests/testthat/test_stan_betareg.R tests/testthat/test_stan_clogit.R tests/testthat/test_stan_functions.R tests/testthat/test_stan_glm.R tests/testthat/test_stan_glmer.R tests/testthat/test_stan_jm.R tests/testthat/test_stan_lm.R tests/testthat/test_stan_mvmer.R tests/testthat/test_stan_nlmer.R tests/testthat/test_stan_polr.R tools/make_cc.R

vignettes/.install_extras

vignettes/ab-testing.Rmd vignettes/aov.Rmd vignettes/betareg.Rmd vignettes/binomial.Rmd

vignettes/children/SETTINGS-gg.txt

vignettes/children/SETTINGS-knitr.txt

vignettes/children/four_steps.txt

vignettes/children/stan_glm_priors.txt

vignettes/continuous.Rmd vignettes/count.Rmd vignettes/glmer.Rmd vignettes/jm.Rmd vignettes/lm.Rmd

vignettes/mrp-files/interaction.rda

vignettes/mrp-files/mrp.bib

vignettes/mrp-files/mrp_sim.rda

vignettes/mrp-files/plot_data.rda

vignettes/mrp-files/preference_by_state.rda

vignettes/mrp-files/sample_alt.rda

vignettes/mrp-files/state_plot_data.rda

vignettes/mrp-files/summary_by_poststrat_var.rda

vignettes/mrp.Rmd vignettes/polr.Rmd vignettes/pooling.Rmd vignettes/priors.Rmd vignettes/rstanarm.Rmd

stan-dev/rstanarm documentation built on July 1, 2024, 12:16 a.m.