Files in stan-dev/shinystan

Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Models

.Rbuildignore

.github/.gitignore

.github/FUNDING.yml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/deploy_shinystan.R R/drop_parameters.R R/generate_quantity.R R/launch_shinystan.R R/misc.R R/retrieve.R R/rhat_ess_monitor_fns.R R/shinystan-objects.R R/shinystan-package.R R/sso-metadata.R R/update_sso.R R/zzz.R README.md

data/eight_schools.rda

images/diagnose.png

images/explore.png

images/home.png

images/nuts-stats.png

inst/ShinyStan/css/ShinyStan.css

inst/ShinyStan/css/ShinyStan_datatables.css

inst/ShinyStan/css/ShinyStan_dygraphs.css

inst/ShinyStan/ggplot_fns.rda

inst/ShinyStan/global.R inst/ShinyStan/global_utils.R inst/ShinyStan/helper_functions/gg_theme_elements.R inst/ShinyStan/helper_functions/hmc_diagnostics_helpers.R inst/ShinyStan/helper_functions/shinystan_helpers.R inst/ShinyStan/helper_functions/summary_stats_helpers.R

inst/ShinyStan/html/accept_stat.html

inst/ShinyStan/html/citation.html

inst/ShinyStan/html/contribs.html

inst/ShinyStan/html/energy.html

inst/ShinyStan/html/home_page_links.html

inst/ShinyStan/html/mcse.html

inst/ShinyStan/html/ndivergent.html

inst/ShinyStan/html/neff.html

inst/ShinyStan/html/nleapfrog.html

inst/ShinyStan/html/nuts.html

inst/ShinyStan/html/rhat.html

inst/ShinyStan/html/stepsize.html

inst/ShinyStan/html/treedepth.html

inst/ShinyStan/markdown/pp_check_tutorial.md inst/ShinyStan/server.R inst/ShinyStan/server_files/debounce.R inst/ShinyStan/server_files/pages/diagnose/ppcheck/ppcheck_helpers.R inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/hists_rep_vs_obs.R inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/hists_resids.R inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/hists_test_statistics.R inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/pp_utils.R inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/rep_vs_resid_rep.R inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/rstanarm.R inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/y_vs_avg_rep.R inst/ShinyStan/server_files/pages/diagnose/ppcheck/ui/pp_get_y_and_yrep.R inst/ShinyStan/server_files/pages/diagnose/server/autocorr.R inst/ShinyStan/server_files/pages/diagnose/server/diagnostics.R inst/ShinyStan/server_files/pages/diagnose/server/multitrace.R inst/ShinyStan/server_files/pages/diagnose/server/rhat_neff_mcse.R inst/ShinyStan/server_files/pages/diagnose/server/summary_stats_sampler.R inst/ShinyStan/server_files/pages/diagnose/ui/multitrace_customize.R inst/ShinyStan/server_files/pages/estimate/server/multiparameter_plot.R inst/ShinyStan/server_files/pages/estimate/server/summary_stats.R inst/ShinyStan/server_files/pages/estimate/server/summary_stats_latex.R inst/ShinyStan/server_files/pages/estimate/ui/multiparam_selectize.R inst/ShinyStan/server_files/pages/explore/server/bivariate.R inst/ShinyStan/server_files/pages/explore/server/density.R inst/ShinyStan/server_files/pages/explore/server/histogram.R inst/ShinyStan/server_files/pages/explore/server/multiview.R inst/ShinyStan/server_files/pages/explore/server/summary_stats_param.R inst/ShinyStan/server_files/pages/explore/server/trivariate.R inst/ShinyStan/server_files/pages/explore/ui/ui_trivariate_select_x.R inst/ShinyStan/server_files/pages/more/notes_and_code.R inst/ShinyStan/server_files/tooltips/tooltips.R inst/ShinyStan/server_files/utilities/extract_sso.R inst/ShinyStan/server_files/utilities/make_param_list_with_groups_sort.R inst/ShinyStan/server_files/utilities/par_samps_reactive.R inst/ShinyStan/server_utils.R

inst/ShinyStan/text/quick_mcse.txt

inst/ShinyStan/text/quick_neff.txt

inst/ShinyStan/text/quick_rhat.txt

inst/ShinyStan/ui.R inst/ShinyStan/ui_files/PAGE_diagnose.R inst/ShinyStan/ui_files/PAGE_estimate.R inst/ShinyStan/ui_files/PAGE_explore.R inst/ShinyStan/ui_files/PAGE_home.R inst/ShinyStan/ui_files/PAGE_more_menu.R inst/ShinyStan/ui_files/about.R inst/ShinyStan/ui_files/autocorr_customize.R inst/ShinyStan/ui_files/bivariate_customize.R inst/ShinyStan/ui_files/density_customize.R inst/ShinyStan/ui_files/diagnostics_by_parameter.R inst/ShinyStan/ui_files/diagnostics_customize.R inst/ShinyStan/ui_files/diagnostics_energy.R inst/ShinyStan/ui_files/diagnostics_help.R inst/ShinyStan/ui_files/diagnostics_ndivergent.R inst/ShinyStan/ui_files/diagnostics_sample.R inst/ShinyStan/ui_files/diagnostics_stepsize.R inst/ShinyStan/ui_files/diagnostics_treedepth.R inst/ShinyStan/ui_files/dynamic_trace_helptext.R inst/ShinyStan/ui_files/glossary.R inst/ShinyStan/ui_files/help.R inst/ShinyStan/ui_files/hist_customize.R inst/ShinyStan/ui_files/model_code.R inst/ShinyStan/ui_files/multiparam_customize.R inst/ShinyStan/ui_files/notepad.R inst/ShinyStan/ui_files/pp_about.R inst/ShinyStan/ui_files/pp_navlist.R inst/ShinyStan/ui_files/pp_navlist_rstanarm.R inst/ShinyStan/ui_files/rhat_neff_mcse_layout.R inst/ShinyStan/ui_files/sampler_stats_customize.R inst/ShinyStan/ui_files/table_customize.R inst/ShinyStan/ui_files/table_latex_main.R inst/ShinyStan/ui_files/table_latex_sidebar.R inst/ShinyStan/ui_files/trivariate_customize.R inst/ShinyStan/ui_files/trivariate_select.R inst/ShinyStan/ui_utils.R

inst/ShinyStan/www/stan_logo.png

inst/ShinyStan/www/wide_ensemble.png

inst/ShinyStan/www/wide_funnel.png

man-roxygen/args-sso.R man-roxygen/reference-bayesvis.R man-roxygen/reference-muth.R man-roxygen/seealso-as.shinystan.R man-roxygen/seealso-demo.R man-roxygen/seealso-drop_parameters.R man-roxygen/seealso-generate_quantity.R man-roxygen/seealso-launch.R man-roxygen/seealso-update_sso.R man/as.shinystan.Rd man/deploy_shinystan.Rd man/drop_parameters.Rd

man/figures/logo.svg

man/figures/stanlogo.png

man/generate_quantity.Rd man/launch_shinystan.Rd man/launch_shinystan_demo.Rd man/rename_model.Rd man/retrieve.Rd man/shinystan-class.Rd man/shinystan-metadata.Rd man/shinystan-package.Rd man/update_sso.Rd

shinystan.Rproj

tests/testthat.R tests/testthat/data_for_retrieve_tests.R

tests/testthat/old_sso_for_tests.rda

tests/testthat/retrieve_sso_answers/test_answer_accept_stat.rds

tests/testthat/retrieve_sso_answers/test_answer_divergent.rds

tests/testthat/retrieve_sso_answers/test_answer_ess.rds

tests/testthat/retrieve_sso_answers/test_answer_mcse.rds

tests/testthat/retrieve_sso_answers/test_answer_mean.rds

tests/testthat/retrieve_sso_answers/test_answer_median.rds

tests/testthat/retrieve_sso_answers/test_answer_quantiles.rds

tests/testthat/retrieve_sso_answers/test_answer_rhat.rds

tests/testthat/retrieve_sso_answers/test_answer_sd.rds

tests/testthat/retrieve_sso_answers/test_answer_stepsize.rds

tests/testthat/retrieve_sso_answers/test_answer_treedepth.rds

tests/testthat/stanfit2_for_tests.rda

tests/testthat/test_creating_sso.R tests/testthat/test_deploy_shinystan.R tests/testthat/test_misc.R tests/testthat/test_using_sso.R vignettes/deploy_shinystan.Rmd vignettes/shinystan-package.Rmd

stan-dev/shinystan documentation built on Aug. 7, 2022, 3:25 a.m.