eyedata: The Bardet-Biedl syndrome gene expression data from Scheetz...

In statOmics/HDDAData: Datasets for the High Dimensional Data Analysis course

The Bardet-Biedl syndrome gene expression data from Scheetz et al. (2006)

Description

Gene expression data from the microarray study by Scheetz et al. (2006). This data is also available in the flare and NormalBetaPrime packages.

Usage

data(eyedata)

Format

This data consists of a list with the following two objects:

genes

is a design matrix with 120 rows and 200 columns.

trim32

is a numeric vector with 120 samples of gene expression levels of the TRIM32 gene.

Details

The data set contains gene expression data (200 genes for 120 samples) and gene expression levels of TRIM32 from the microarray experiments of mammalian eye tissue samples of Scheetz et al. (2006).

References

Scheetz, T. E., Kim K.-Y. A., Swiderski R. E., Philp A. R., Braun, T. A., Knudtson, K. L., Dorrance, A. M., DiBona, G. F., Huang, J., Casavant, T. L., Sheffield, V. C., and Stone, E. M. (2006). "Regulation of gene expression in the mammalian eye and its relevance to eye disease." Proceedings of the National Academy of Sciences, 103(39):14429-14434.

statOmics/HDDAData documentation built on Nov. 9, 2022, 9:29 a.m.