API for statdivlab/tinyvamp
Modeling complex measurement error in microbiome experiments
| Global functions | |
|---|---|
| bootstrap_ci | Man page Source code |
| bootstrap_lrt | Source code |
| calculate_U | Source code |
| calculate_criterion_lr | Source code |
| calculate_log_penalty | Man page Source code Source code |
| construct_Z_tilde | Source code |
| costea2017_mock_composition | Man page |
| crossfit_U | Source code |
| dataframes_to_parameters | Man page Source code |
| deriv_criterion_lr | Source code |
| dfs_to_derivs | Source code |
| dfs_to_mean | Source code |
| do_one_boot | Source code |
| do_one_lrt | Source code |
| do_one_simulation | Source code |
| estimate_parameters | Man page Source code |
| evaluate_criterion_lr | Source code |
| fit_simple_model | Source code |
| fit_simulation_model | Source code |
| get_A_tilde_k_list | Source code |
| get_Ak_list | Source code |
| get_gmm_inv_weights | Source code |
| gmm_criterion | Source code |
| log_penalty_grad | Source code |
| log_penalty_hess | Source code |
| logpois | Source code |
| lr_to_ra | Source code |
| mean_jac | Source code |
| mean_jac_lr_faster | Source code |
| meaninate | Source code |
| mu_d_P | Man page Source code |
| mu_d_alpha_tilde | Source code |
| mu_d_beta | Man page Source code |
| mu_d_beta_faster | Source code |
| mu_d_gamma | Man page Source code |
| mu_d_gamma_faster | Source code |
| mu_d_gamma_tilde | Man page Source code |
| mu_d_rho_faster | Man page Source code |
| mu_d_rho_tilde_faster | Man page Source code |
| nullify | Source code |
| numerical_jacobian | Source code |
| par_to_jacobian_row | Source code |
| parameters_to_dataframes | Source code |
| poisson_criterion | Source code |
| push_row | Source code |
| ra_to_lr | Source code |
| refit_model | Source code |
| safe_divide | Source code |
| safe_multiply | Source code |
| simpl_auglag_fnnls | Source code |
| simpl_opt_linesearch_fnnls | Source code |
| simulate_paper_data | Source code |
| simulate_simple_data | Source code |
| universal_test | Source code |
