Man pages for ste-depo/LowMACA
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
| alignSequences | Align sequences via clustalo |
| allPfamAnalysis | Global analysis of a repository of mutations |
| BLOSUM62 | BLOSUM62 matrix |
| bpAll | Draw a mutation barplot |
| entropy | Calculate LowMACA statistics |
| getMutations | Retrieve mutation data for a LowMACA object |
| lfm | Show significant clusters of mutations |
| lfmSingleSequence | Show significant clusters of mutations of every gene in a... |
| lmAlignment | Show Alignment Results from a LowMACA object |
| lmEntropy | Show Entropy Information Contained in a LowMACA object |
| lmMutations | Show Mutation Data Contained in a LowMACA object |
| lmObj | Example of a LowMACA object |
| lmParams | Show and set parameters |
| lmPlot | Draw a comprehensive LowMACA plot |
| lmPlotSingleSequence | Draw a LowMACA comprehensive plot of a specified gene within... |
| LowMACA_AML | Example of a LowMACA object |
| LowMACA-class | Class '"LowMACA"' |
| LowMACA-package | LowMACA : Low frequency Mutations Analysis via Consensus... |
| mapMutations | Map mutations on consensus sequence |
| newLowMACA | Construct a LowMACA object |
| nullProfile | Draw a mutational profile plot |
| parallelize | Show and set parallelization options |
| protter | Draw a Protter plot |
| setup | Setup of a LowMACA object |
| showTumorType | List of tumor types |
