lmEntropy: Show Entropy Information Contained in a LowMACA object

In ste-depo/LowMACA: LowMACA - Low frequency Mutation Analysis via Consensus Alignment

Show Entropy Information Contained in a LowMACA object

Description

Method for objects of class LowMACA. It can show the results of entropy analysis performed on the LowMACA object by the function entropy

Usage

lmEntropy(object)

Arguments

object

object of class LowMaca

Value

A list containing the following elements:

• bw a numeric value that represents the bandwidth used to calculate the Shannon entropy score

• uniform an object of class function that was used to calculate the score

• absval a numeric value representing the Shannon entropy of the sample data

• log10pval a numeric value representing the pvalue of the Shannon entropy score against a gamma distribution with same mean and variance as the empirical uniform distribution in -log10 scale

• pvalue a numeric value representing the pvalue of the Shannon entropy score against a gamma distribution with same mean and variance as the empirical uniform distribution

Author(s)

Stefano de Pretis, Giorgio Melloni

See Also

entropy

Examples

data('lmObj')
lmObj <- entropy(lmObj)
lmEntropy(lmObj)

ste-depo/LowMACA documentation built on Oct. 15, 2022, 11:53 p.m.