Man pages for steibelj/gwaR
Functions for performing GWA from GBLUP
| anova.gblup | print 'gblup' object |
| diagprod | Efficient computation of diagonals of matrix products |
| find_peaks | a function to confirm GWA peaks and to detect secondary peaks... |
| gblup | prediction of genomic breeding values for use in GWA |
| gblup.default | @rdname gblup @export |
| getpvalue | pvalue computation for a 'gwas' object |
| gwaR-package | Functions for performing GWA from GBLUP |
| gwas | Estimation of SNP effects and their variances |
| GWAS | Estimation of SNP effects and their variances |
| gwas.default | @rdname gwas @export |
| IC_base | Not intended for direct use. See 'IC_gwa' for details |
| IC_gwa | Computes confidence interval of GWA peak |
| lrt | Likelihood ratio tests for GBLUP models |
| manhattan_plot | Manhattan plots of p-values |
| plot.gwas | Significance plots and pvalues from 'gwas' output |
| plot.GWAS | Significance plots and pvalues from 'gwas' output |
| print.gblup | print 'gblup' object |
| print.summary.gblup | print 'summary.gblup' object |
| qqgplot | q-qplots of p-values |
| run.gwa | GBLUP and GWA computation |
| summary.gblup | summary for 'gblup' object |
| summary.gwas | Significance summary for a 'gwas' object |
| summary.GWAS | Significance summary for a 'gwas' object |
| test.peak | Likelihood ratio tests for QTL peaks |
| varcomp | print 'gblup' object |
