find_peaks: a function to confirm GWA peaks and to detect secondary peaks...
In steibelj/gwaR: Functions for performing GWA from GBLUP
Description
Usage
Arguments
Value
Description
A function to find secondary peaks in a GWA
Usage
1
2
find_peaks(gbl, gwa, Z, map, threshold = 0.95, criteria = c("qvalue",
"bonferroni", "uncorrected"))
Arguments
gbl
a gblup object generated by gblup
gwa
a gblup object generated by gwa
Z
a matrix of standardized genotypes
map
a map dataset for the SNP in Z
threshold
a significance threshold for GWA
criteria
the p-value correction to use
Value
list with three elements
-
gblup the new gblup object with peak SNP as fixed effects
gwas a new gwas objectest to look for peaks
peaks a map with the positions of the included peaks
steibelj/gwaR documentation built on May 30, 2019, 10:45 a.m.
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Description Usage Arguments Value
Description
A function to find secondary peaks in a GWA
Usage
1 2 | find_peaks(gbl, gwa, Z, map, threshold = 0.95, criteria = c("qvalue",
"bonferroni", "uncorrected"))
|
Arguments
gbl |
a gblup object generated by |
gwa |
a gblup object generated by |
Z |
a matrix of standardized genotypes |
map |
a map dataset for the SNP in Z |
threshold |
a significance threshold for GWA |
criteria |
the p-value correction to use |
Value
list with three elements
-
gblupthe new gblup object with peak SNP as fixed effects gwasa new gwas objectest to look for peakspeaksa map with the positions of the included peaks
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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