manhattan_plot: Manhattan plots of p-values

In steibelj/gwaR: Functions for performing GWA from GBLUP

Description

A function to create manhattan plots from GWA and QTL mapping analyses.

Usage

manhattan_plot(pvalues, map, threshold = 0.01, col = c("black", "red"),
  chrom = NULL, ...)

Arguments

pvalues	A vector of pvalues with SNP, marker or position names
map	a genetic map: a data.frame with SNP or marker names in rows, chromosome name (chr column) and position (pos column)
threshold	the threshold of significance
col	a vector of strings with color names for painting SNP according to their chromosome
chrom	a vector of chromosomal names to be included in the graphic by default all chromosomes are included
...	additional graphical parameters used by plot

Value

NULL. A graphic is be generated

steibelj/gwaR documentation built on May 30, 2019, 10:45 a.m.