Files in stela2502/IMGThelper
An R package to access IMGT reult files

.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/001_class.R R/002_dataFiles.R R/ChordDiagram.R R/FreqNoNUC.R R/VDJusage.R R/VJcombination.R R/analyzeCDR3.R R/compare.R R/open.R R/productive.R R/recurringProductives.R R/stack.R R/stacked_bargraph.R R/tree.R R/treemap.R README.md R_scripts_VDJ/GINI.R
R_scripts_VDJ/IGHVorder3.txt
R_scripts_VDJ/N_nucleotide_nonclonal_loop_short_copy.R
R_scripts_VDJ/fixFiles.sh
R_scripts_VDJ/processed/0_N_Nucl_additions_2.R R_scripts_VDJ/processed/CDR3_analysis_tris_4.R R_scripts_VDJ/processed/ChordDiagram_stijn_crazy_copy.R R_scripts_VDJ/processed/VDJseq_analysisloop_VJonly_morethanreadnumber_v3.R R_scripts_VDJ/processed/VDJusageflat.R R_scripts_VDJ/processed/V_D_J_usage_new_IMGT.R R_scripts_VDJ/processed/analyze_cdr3_copy.R R_scripts_VDJ/processed/stacked_bargraph_reads_vs_cellnumber.R R_scripts_VDJ/processed/treemapper_reads_vs_cellnumber_new_imgt_copy_2.R R_scripts_VDJ/processed/very_long_CDR3list_colors.R
inst/extdata/10_V-REGION-mutation-hotspots.txt
inst/extdata/11_Parameters.txt
inst/extdata/1_Summary.txt
inst/extdata/2_IMGT-gapped-nt-sequences.txt
inst/extdata/3_Nt-sequences.txt
inst/extdata/4_IMGT-gapped-AA-sequences.txt
inst/extdata/5_AA-sequences.txt
inst/extdata/6_Junction.txt
inst/extdata/7_V-REGION-mutation-and-AA-change-table.txt
inst/extdata/8_V-REGION-nt-mutation-statistics.txt
inst/extdata/9_V-REGION-AA-change-statistics.txt
inst/extdata/IGHVorder3.txt
inst/extdata/treemapcolors8.csv
man/ChordDiagram-methods.Rd man/IMGThelper.Rd man/NoNNuc-methods.Rd man/VDJusage-methods.Rd man/VJcombination-methods.Rd man/analyzeCDR3-methods.Rd man/compare-methods.Rd man/open-methods.Rd man/productive-methods.Rd man/recurringProductives-methods.Rd man/stack-methods.Rd man/stacked_bargraph-methods.Rd man/tree-methods.Rd man/treemap-methods.Rd
scratchbord/.gitignore
scratchbord/Find_external.pl
scratchbord/PutNewCodeHere.R
scratchbord/convertR_S3_To_S4.pl
scratchbord/splitter.pl
tests/testthat.R tests/testthat/test-01_class.R
vignettes/.gitignore
vignettes/PopulationBased.Rmd
stela2502/IMGThelper documentation built on Nov. 5, 2019, 9:34 a.m.