Create a Chord diagram of V gene usage
1 2 |
x |
the IMGThelper object |
ofile |
the pdf out file |
col |
the colors to be used in the plot (leave NULL if unsure!) |
cells |
the cell IDs to look into (default NULL == all) |
cutoff |
select only re-occuring VDJ recombination events (default 5; see ?recurringProductives) |
sortFun |
a function to sort the Ig/TCR fragments default function(x) sort(x) |
plotType |
xolor the V genes according to the family (deafult 1) or the segment (2) |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.