ChordDiagram-methods: description of function ChordDiagram

Description Usage Arguments

Description

Create a Chord diagram of V gene usage

Usage

1
2
ChordDiagram(x, ofile, col = NULL, cells = NULL, cutoff = 5,
  sortFun = function(x) {     sort(x) }, plotType = 1)

Arguments

x

the IMGThelper object

ofile

the pdf out file

col

the colors to be used in the plot (leave NULL if unsure!)

cells

the cell IDs to look into (default NULL == all)

cutoff

select only re-occuring VDJ recombination events (default 5; see ?recurringProductives)

sortFun

a function to sort the Ig/TCR fragments default function(x) sort(x)

plotType

xolor the V genes according to the family (deafult 1) or the segment (2)


stela2502/IMGThelper documentation built on Nov. 5, 2019, 9:34 a.m.