RFclust.SGE: RFclust.SGE

In stela2502/RFclust.SGE: Unsupervised clustering using random forest run on SGE

RFclust.SGE

Description

An S4 class to run unsupervides clustering based on random forrest predictors using the Sun Grid Engine.

Slots

dat

the data that should be clustered (dgCMatrix with column == samples rows == observations)

email

the users email for the SGE report

slices

the number of slices the data should be analyzed in

tmp.path

the temp path for the clustering results

SGE

run using Sun Grid Engine (default= F)

distRF

the density data (internal use only)

RFfiles

an internal list of RF files (internal use only)

name

the name for this object that will be used to identify the data object in the spawned processes

Source

https://labs.genetics.ucla.edu/horvath/RFclustering/RFclustering.htm

stela2502/RFclust.SGE documentation built on May 26, 2023, 2:31 a.m.