FACS.heatmap-methods: description of function FACS.heatmap

In stela2502/Rscexv: The backend for the SCExV (single cell expression view) server.

description of function FACS.heatmap

Description

Plots the FACS heatmaps

Usage

FACS.heatmap(
  dataObj,
  ofile,
  title = "Heatmap",
  reorder = F,
  nmax = 500,
  hc.row = NA,
  ColSideColors = NA,
  RowSideColors = NA,
  width = 6,
  height = 6,
  margins = c(15, 10),
  hclustfun = function(c) {
     hclust(c, method = "ward")
 },
  distfun = function(x) as.dist(1 - cor(t(x), method = "pearson")),
  ...
)

Arguments

dataObj	TEXT MISSING
ofile	TEXT MISSING
title	TEXT MISSING default='Heatmap'
reorder	if yes the data matrix will be reordered to the clusters object (default=F)
nmax	TEXT MISSING default=500
hc.row	TEXT MISSING default=NA
ColSideColors	TEXT MISSING default=NA
RowSideColors	TEXT MISSING default=NA
FACS.heatmap	TEXT MISSING

stela2502/Rscexv documentation built on July 6, 2022, 9:02 p.m.