Files in stela2502/Rscexv
The backend for the SCExV (single cell expression view) server.

.gitignore
.project
.settings/de.walware.r.core.prefs
DESCRIPTION
Makefile
NAMESPACE
R/Class_01_class.R R/Class_Rscexv.R R/Class_check.dataObj.R R/Class_filter.on.controls.no.inv.R R/Class_match.sample.names.R R/Class_norm.PCR.R R/Class_pwd.R R/Class_show.R R/Class_z.score.PCR.mad.R R/Clustering_clusters.R R/Clustering_difference.R R/Clustering_mds.and.clus.R R/Clustering_quality_of_fit.R R/Coexpression_coexpressGenes.R R/Coexpression_coexpressionMatrix.R R/Coexpression_plotcoma.R R/FileLocks.R R/Grouping_checkGrouping.R R/Grouping_group_1D.R R/Grouping_group_1D_worker.R R/Grouping_group_on_strings.R R/Grouping_implyCloseOrder.R R/Grouping_regroup.R R/Plot_this_color.R R/Plots_FACS.heatmap.R R/Plots_PCR.heatmap.R R/Plots_col4bean.R R/Plots_colors_4.R R/Plots_complexHeatmap.R R/Plots_mergeComplexSampleGroupings.R R/Plots_mergeSampleGroupings.R R/Plots_plot.beans.R R/Plots_plot.histograms.R R/Plots_plot.legend.R R/Plots_plot.violines.R R/Plots_vioplot.R R/Preprocess_plug.999.R R/Preprocess_scale.FACS.data.R R/Preprocess_sd.filter.R R/Pvalues_SingleCellAssay_Pvalues.R R/Pvalues_boot_p_value.R R/Pvalues_calc.lin.lang.4_list.R R/Pvalues_create_p_values.R R/Pvalues_p.lin.lang.R R/Pvalues_write.stats.R R/RFgrouping_bestGrouping.R R/RFgrouping_createRFgrouping_samples.R R/RFgrouping_identifyBestGrouping.R R/RFgrouping_predict.rf.R R/RFgrouping_qualityTest.R R/RFgrouping_rfCluster.R R/ReadFiles_force.unique.sample.R R/ReadFiles_read.FACS.R R/ReadFiles_read.FACS.set.R R/ReadFiles_read.PCR.R R/ReadFiles_read.PCR.heatmap.R R/ReadFiles_read.PCR.set.R R/Rscexv_transform_kick.expressed.negContr.samples.R R/Rscexv_transform_remove.FACS.genes.R R/Rscexv_transform_remove.genes.R R/Rscexv_transform_remove.samples.R R/Rscexv_transform_reorder.genes.R R/Rscexv_transform_reorder.samples.R R/SCExV_Functions_analyse.data.R R/SCExV_Functions_createDataObj.R R/SCExV_Functions_exportGroups.R R/SCExV_Functions_plotDensity.R R/SCExV_Functions_saveObj.R R/as_BioData.R R/beanplot.R R/beanplot.fixcolorvector.R R/beanplot.getgroupsfromarguments.R R/beanplot.makecombinedname.R R/beanplot.seemslog.R R/beanplotbeanlines.R R/beanplotinnerborders.R R/beanplotpolyshapes.R R/beanplotscatters.R R/heatmap.3.R README.md
data/InbuiltData.RData
data/analyzed.RData
data/analyzedNOFACS.RData
functionallity2implement/TestObject_S4_Development.zip
inst/Array1_Index_sort.csv
inst/Index_sort_Array2.csv
inst/Index_sort_Array3.csv
inst/PCR_Array1.csv
inst/PCR_Array2.csv
inst/PCR_Array3.csv
inst/densityWebGL.html
install.R man/FACS.heatmap-methods.Rd man/InbuiltData.Rd man/PCR.heatmap-methods.Rd man/Rscexv-methods.Rd man/Rscexv.Rd man/SingleCellAssay_Pvalues-methods.Rd man/analyse.data-methods.Rd man/analyzed.Rd man/bestGrouping.Rd man/boot_p_value-methods.Rd man/calc.lin.lang.4_list-methods.Rd man/check.dataObj-methods.Rd man/checkGrouping-methods.Rd man/clusters-methods.Rd man/coexpressGenes-methods.Rd man/coexpressionMatrix-methods.Rd man/col4bean-methods.Rd man/colors_4-methods.Rd man/complexHeatmap-methods.Rd man/createDataObj-methods.Rd man/createRFgrouping_samples-methods.Rd man/create_p_values-methods.Rd man/difference-methods.Rd man/exportGroups-methods.Rd man/filter.on.controls.no.inv-methods.Rd man/force.unique.sample-methods.Rd man/group_1D-methods.Rd man/group_1D_worker-methods.Rd man/group_on_strings-methods.Rd man/identifyBestGrouping-methods.Rd man/implyCloseOrder-methods.Rd man/kick.expressed.negContr.samples-methods.Rd man/locked-methods.Rd man/match.sample.names-methods.Rd man/mds.and.clus-methods.Rd man/mergeComplexSampleGroupings-methods.Rd man/mergeSampleGroupings-methods.Rd man/norm.PCR-methods.Rd man/p.lin.lang-methods.Rd man/plot.beans-methods.Rd man/plot.histograms-methods.Rd man/plot.legend-methods.Rd man/plot.violines-methods.Rd man/plotDensity-methods.Rd man/plotcoma-methods.Rd man/plug.999-methods.Rd man/predict.rf.Rd man/pwd-methods.Rd man/qualityTest-methods.Rd man/quality_of_fit-methods.Rd man/read.FACS-methods.Rd man/read.FACS.set-methods.Rd man/read.PCR-methods.Rd man/read.PCR.heatmap-methods.Rd man/read.PCR.set-methods.Rd man/regroup-methods.Rd man/release.lock-methods.Rd man/remove.FACS.genes-methods.Rd man/remove.genes-methods.Rd man/remove.samples-methods.Rd man/reorder.genes-methods.Rd man/reorder.samples-methods.Rd man/rfCluster.Rd man/saveObj-methods.Rd man/scale.FACS.data-methods.Rd man/sd.filter-methods.Rd man/set.lock-methods.Rd man/show-methods.Rd man/this.color-methods.Rd man/vioplot-methods.Rd man/write.stats-methods.Rd man/z.score.PCR.mad-methods.Rd tests/testthat.R
tests/testthat/.gitignore
tests/testthat/test.1.0Rscexv.r tests/testthat/test.1.1Grouping.r tests/testthat/test.1.2.Pvalues.r tests/testthat/test.2.0Rscexv_no_FACS.r tests/testthat/test.export.r todo/Tool_Coexpression.R todo/Tool_RandomForest.R todo/Tool_grouping.R
todo/scrapbook.txt
todo/source_Tool_Pipe.R todo/source_Tool_Plot.R
stela2502/Rscexv documentation built on Dec. 14, 2017, 7:46 p.m.