counts_obj: counts_obj

In stemangiola/sccomp: Robust Outlier-aware Estimation of Composition and Heterogeneity for Single-cell Data

counts_obj

Description

A tidy example dataset containing cell counts per cell group (cluster), sample, and phenotype for differential analysis. This dataset represents the counts of cells in various phenotypes and cell groups across multiple samples.

Usage

data(counts_obj)

Format

A tidy data frame with the following columns:

• sample: Factor, representing the sample identifier.

• type: Factor, indicating the sample type (e.g., benign, cancerous).

• phenotype: Factor, representing the cell phenotype (e.g., B_cell, HSC, etc.).

• count: Integer, representing the number of cells for each cell group within each sample.

• cell_group: Factor, representing the cell group (e.g., BM, B1, Dm, etc.).

Value

A tibble representing cell counts per cluster, with columns for sample, type, phenotype, cell group, and counts.

stemangiola/sccomp documentation built on Dec. 20, 2024, 8:38 a.m.