sce_obj: sce_obj

In stemangiola/sccomp: Robust Outlier-aware Estimation of Composition and Heterogeneity for Single-cell Data

sce_obj

Description

Example SingleCellExperiment object containing gene expression data for 106,297 cells across two assays: counts and logcounts. The object includes metadata and assay data for RNA expression, which can be used directly in differential analysis functions like sccomp_glm.

Usage

data(sce_obj)

Format

A SingleCellExperiment object with the following structure:

• assays: Two assays: counts (raw RNA counts) and logcounts (log-transformed counts).

• rowData: No additional row-level metadata is present.

• colData: Metadata for each cell, including six fields: sample, type, nFeature_RNA, ident, and others.

• dim: 1 feature and 106,297 cells.

• colnames: Cell identifiers for all 106,297 cells.

Value

A SingleCellExperiment object containing single-cell RNA expression data.

stemangiola/sccomp documentation built on Dec. 20, 2024, 8:38 a.m.