API for stemangiola/ttBulk
Friendly tidy wrappers for facilitating transcriptional analyses
| Global functions | |
|---|---|
| CoreAlg | Source code |
| X_cibersort | Man page |
| add_adjusted_counts_for_unwanted_variation_bulk | Man page |
| add_attr | Man page |
| add_cell_type_proportions | Man page |
| add_class | Man page |
| add_clusters_SNN_bulk | Man page |
| add_clusters_kmeans_bulk | Man page |
| add_differential_transcript_abundance_bulk | Man page |
| add_normalised_counts_bulk | Man page |
| add_normalised_counts_bulk.calcNormFactor | Man page |
| add_normalised_counts_bulk.get_cpm | Man page |
| add_normalised_counts_bulk.get_low_expressed | Man page |
| add_reduced_dimensions_MDS_bulk | Man page |
| add_reduced_dimensions_PCA_bulk | Man page |
| add_reduced_dimensions_TSNE_bulk | Man page |
| add_rotated_dimensions | Man page |
| add_symbol_from_ensembl | Man page |
| adjust_abundance | Man page Source code |
| adjust_abundance.default | Source code |
| adjust_abundance.ttBulk | Source code |
| aggregate_duplicated_transcripts_bulk | Man page |
| aggregate_duplicates | Man page Source code |
| aggregate_duplicates.default | Source code |
| aggregate_duplicates.ttBulk | Source code |
| annotate_symbol | Man page Source code |
| annotate_symbol.default | Source code |
| annotate_symbol.ttBulk | Source code |
| as_matrix | Man page Source code |
| bind_rows | Man page Source code |
| bind_rows.default | Source code |
| bind_rows.ttBulk | Source code |
| breast_tcga_mini | Man page |
| cluster_elements | Man page Source code |
| cluster_elements.default | Source code |
| cluster_elements.ttBulk | Source code |
| counts | Man page |
| counts_ensembl | Man page |
| counts_mini | Man page |
| create_tt_from_bam_sam_bulk | Man page Source code |
| create_tt_from_tibble_bulk | Man page Source code |
| deconvolve_cellularity | Man page Source code |
| deconvolve_cellularity.default | Source code |
| deconvolve_cellularity.ttBulk | Source code |
| doPerm | Source code |
| drop_class | Man page |
| ensembl_symbol_mapping | Man page |
| error_if_counts_is_na | Man page Source code |
| error_if_duplicated_genes | Man page Source code |
| error_if_log_transformed | Man page Source code |
| error_if_wrong_input | Man page Source code |
| filter_variable_transcripts | Man page Source code |
| get_abundance_norm_if_exists | Man page |
| get_adjusted_counts_for_unwanted_variation_bulk | Man page |
| get_cell_type_proportions | Man page |
| get_clusters_SNN_bulk | Man page |
| get_clusters_kmeans_bulk | Man page |
| get_differential_transcript_abundance_bulk | Man page |
| get_elements | Man page |
| get_elements_features | Man page |
| get_elements_features_abundance | Man page |
| get_normalised_counts_bulk | Man page |
| get_reduced_dimensions_MDS_bulk | Man page |
| get_reduced_dimensions_PCA_bulk | Man page |
| get_reduced_dimensions_TSNE_bulk | Man page |
| get_rotated_dimensions | Man page |
| get_sample_transcript | Man page |
| get_sample_transcript_counts | Man page |
| get_symbol_from_ensembl | Man page |
| ifelse2_pipe | Man page Source code |
| ifelse_pipe | Man page Source code |
| left_join | Man page |
| merged_ttBulk_object | Man page |
| mutate | Man page Source code |
| mutate.default | Source code |
| mutate.ttBulk | Source code |
| my_CIBERSORT | Source code |
| parse_formula | Man page Source code |
| prepend | Man page |
| reduce_dimensions | Man page Source code |
| reduce_dimensions.default | Source code |
| reduce_dimensions.ttBulk | Source code |
| remove_redundancy | Man page Source code |
| remove_redundancy.default | Source code |
| remove_redundancy.ttBulk | Source code |
| remove_redundancy_elements_though_reduced_dimensions | Man page |
| remove_redundancy_elements_through_correlation | Man page |
| rotate_dimensions | Man page Source code |
| rotate_dimensions.default | Source code |
| rotate_dimensions.ttBulk | Source code |
| scale_abundance | Man page Source code |
| scale_abundance.default | Source code |
| scale_abundance.ttBulk | Source code |
| scale_design | Man page Source code |
| select_closest_pairs | Man page |
| test_differential_abundance | Man page Source code |
| test_differential_abundance.default | Source code |
| test_differential_abundance.ttBulk | Source code |
| ttBulk | Man page Source code |
| ttBulk.default | Source code |
| ttBulk.tbl_df | Source code |
