API for stemangiola/ttBulk
Friendly tidy wrappers for facilitating transcriptional analyses

Global functions
CoreAlg Source code
X_cibersort Man page
add_adjusted_counts_for_unwanted_variation_bulk Man page
add_attr Man page
add_cell_type_proportions Man page
add_class Man page
add_clusters_SNN_bulk Man page
add_clusters_kmeans_bulk Man page
add_differential_transcript_abundance_bulk Man page
add_normalised_counts_bulk Man page
add_normalised_counts_bulk.calcNormFactor Man page
add_normalised_counts_bulk.get_cpm Man page
add_normalised_counts_bulk.get_low_expressed Man page
add_reduced_dimensions_MDS_bulk Man page
add_reduced_dimensions_PCA_bulk Man page
add_reduced_dimensions_TSNE_bulk Man page
add_rotated_dimensions Man page
add_symbol_from_ensembl Man page
adjust_abundance Man page Source code
adjust_abundance.default Source code
adjust_abundance.ttBulk Source code
aggregate_duplicated_transcripts_bulk Man page
aggregate_duplicates Man page Source code
aggregate_duplicates.default Source code
aggregate_duplicates.ttBulk Source code
annotate_symbol Man page Source code
annotate_symbol.default Source code
annotate_symbol.ttBulk Source code
as_matrix Man page Source code
bind_rows Man page Source code
bind_rows.default Source code
bind_rows.ttBulk Source code
breast_tcga_mini Man page
cluster_elements Man page Source code
cluster_elements.default Source code
cluster_elements.ttBulk Source code
counts Man page
counts_ensembl Man page
counts_mini Man page
create_tt_from_bam_sam_bulk Man page Source code
create_tt_from_tibble_bulk Man page Source code
deconvolve_cellularity Man page Source code
deconvolve_cellularity.default Source code
deconvolve_cellularity.ttBulk Source code
doPerm Source code
drop_class Man page
ensembl_symbol_mapping Man page
error_if_counts_is_na Man page Source code
error_if_duplicated_genes Man page Source code
error_if_log_transformed Man page Source code
error_if_wrong_input Man page Source code
filter_variable_transcripts Man page Source code
get_abundance_norm_if_exists Man page
get_adjusted_counts_for_unwanted_variation_bulk Man page
get_cell_type_proportions Man page
get_clusters_SNN_bulk Man page
get_clusters_kmeans_bulk Man page
get_differential_transcript_abundance_bulk Man page
get_elements Man page
get_elements_features Man page
get_elements_features_abundance Man page
get_normalised_counts_bulk Man page
get_reduced_dimensions_MDS_bulk Man page
get_reduced_dimensions_PCA_bulk Man page
get_reduced_dimensions_TSNE_bulk Man page
get_rotated_dimensions Man page
get_sample_transcript Man page
get_sample_transcript_counts Man page
get_symbol_from_ensembl Man page
ifelse2_pipe Man page Source code
ifelse_pipe Man page Source code
left_join Man page
merged_ttBulk_object Man page
mutate Man page Source code
mutate.default Source code
mutate.ttBulk Source code
my_CIBERSORT Source code
parse_formula Man page Source code
prepend Man page
reduce_dimensions Man page Source code
reduce_dimensions.default Source code
reduce_dimensions.ttBulk Source code
remove_redundancy Man page Source code
remove_redundancy.default Source code
remove_redundancy.ttBulk Source code
remove_redundancy_elements_though_reduced_dimensions Man page
remove_redundancy_elements_through_correlation Man page
rotate_dimensions Man page Source code
rotate_dimensions.default Source code
rotate_dimensions.ttBulk Source code
scale_abundance Man page Source code
scale_abundance.default Source code
scale_abundance.ttBulk Source code
scale_design Man page Source code
select_closest_pairs Man page
test_differential_abundance Man page Source code
test_differential_abundance.default Source code
test_differential_abundance.ttBulk Source code
ttBulk Man page Source code
ttBulk.default Source code
ttBulk.tbl_df Source code
stemangiola/ttBulk documentation built on Dec. 8, 2019, 4:27 p.m.