get_bibliography-methods: Produces the bibliography list of your workflow

In stemangiola/ttBulk: Brings transcriptomics to the tidyverse

Produces the bibliography list of your workflow

Description

get_bibliography() takes as input a 'tidybulk'

Usage

get_bibliography(.data)

## S4 method for signature 'tbl'
get_bibliography(.data)

## S4 method for signature 'tbl_df'
get_bibliography(.data)

## S4 method for signature 'spec_tbl_df'
get_bibliography(.data)

## S4 method for signature 'tidybulk'
get_bibliography(.data)

## S4 method for signature 'SummarizedExperiment'
get_bibliography(.data)

## S4 method for signature 'RangedSummarizedExperiment'
get_bibliography(.data)

Arguments

.data

A 'tbl' (with at least three columns for sample, feature and transcript abundance) or 'SummarizedExperiment' (more convenient if abstracted to tibble with library(tidySummarizedExperiment))

Details

'r lifecycle::badge("maturing")'

This methods returns the bibliography list of your workflow from the internals of a tidybulk object (attr(., "internals"))

Value

NULL. It prints a list of bibliography references for the software used through the workflow.

A consistent object (to the input) with additional columns for the statistics from the hypothesis test (e.g., log fold change, p-value and false discovery rate).

A consistent object (to the input) with additional columns for the statistics from the hypothesis test (e.g., log fold change, p-value and false discovery rate).

Examples

get_bibliography(tidybulk::se_mini)

stemangiola/ttBulk documentation built on Dec. 14, 2024, 6:12 a.m.