as_SummarizedExperiment-methods: as_SummarizedExperiment

In stemangiola/ttBulk: Brings transcriptomics to the tidyverse

as_SummarizedExperiment

Description

as_SummarizedExperiment() creates a 'SummarizedExperiment' object from a 'tbl' or 'tidybulk' tbl formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |

Usage

as_SummarizedExperiment(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL
)

## S4 method for signature 'spec_tbl_df'
as_SummarizedExperiment(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL
)

## S4 method for signature 'tbl_df'
as_SummarizedExperiment(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL
)

## S4 method for signature 'tidybulk'
as_SummarizedExperiment(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL
)

Arguments

.data	A tibble
.sample	The name of the sample column
.transcript	The name of the transcript/gene column
.abundance	The name of the transcript/gene abundance column

Value

A 'SummarizedExperiment' object

A 'SummarizedExperiment' object

A 'SummarizedExperiment' object

A 'SummarizedExperiment' object

stemangiola/ttBulk documentation built on Dec. 14, 2024, 6:12 a.m.