getMethylSet: Export the simulateMethObject to a MethylSet to be used in...
In stephaniehicks/quantroSim: Supporting Data Simulation R-package for quantro
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This function takes in the simulateMethObject and
returns a MethylSet object which can be used in the minfi package.
Can use functions from mini such as getMeth, getUnmeth,
getBeta, getM, getCN. Because it is simulated data,
there is no manifest and no preprocessing in the MethylSet returned.
Usage
1
getMethylSet(simulateMethObject)
Arguments
simulateMethObject
Must be an object created from simulateMeth
Value
A MethylSet object
Author(s)
Stephanie Hicks
Examples
1
2
3
4
methTruth <- simulateMethTruth(nProbes = 2e4, nGroups = 2)
sim <- simulateMeth(methTruth, meth.platform = "methArrays",
nSamps = 5, nMol = 10^6)
mset <- getMethylSet(sim)
stephaniehicks/quantroSim documentation built on May 30, 2019, 3:17 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
This function takes in the simulateMethObject and
returns a MethylSet object which can be used in the minfi package.
Can use functions from mini such as getMeth, getUnmeth,
getBeta, getM, getCN. Because it is simulated data,
there is no manifest and no preprocessing in the MethylSet returned.
Usage
1 | getMethylSet(simulateMethObject)
|
Arguments
simulateMethObject |
Must be an object created from |
Value
A MethylSet object
Author(s)
Stephanie Hicks
Examples
1 2 3 4 | methTruth <- simulateMethTruth(nProbes = 2e4, nGroups = 2)
sim <- simulateMeth(methTruth, meth.platform = "methArrays",
nSamps = 5, nMol = 10^6)
mset <- getMethylSet(sim)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.